FW: MDSC Lecture for MISM Internship
Hi all, I had an excellent conversation with Kayla today, who is working on the MISM internship program. She explained the program is hosting 6 interns (graduate students, 5 PhD and 1 Masters) for 10 weeks from May 18 to ~July 24. Each RP will have 2 interns, and the research projects are outlined in the attached document. During the program, MISM will host various presentations/workshops (see the other attached doc). I think it would be great for MDSC to host an introduction to model and data sharing presentation during the first week (orientation). This could introduce the FAIR principles and existing resources such as the great model, data, code, and workflow guidelines<https://imageomics.github.io/Imageomics-guide/wiki-guide/FAIR-Guide/> from the Imageomics group we met at the FARR conference. There is room in the schedule for a later presentation in July. This could focus on more detailed FAIR components like ontologies, exchange formats like SBML, and Croissant for ML workflows. I’m happy to lead this effort. Ashok, we could also bring in other RENCI folks that are experts or at least consult with them. I know we have some folks who work with Croissant. Happy to talk more about this before/after journal club on Tuesday. I wanted to start a conversation here since we don’t have another meeting (aside from journal club) until April 27. If this sounds good to folks, I’d like to nail down a time slot for orientation week and start outlining a presentation before April 27. Best, Aubrie Aubrie Weyhmiller Research Scientist Renaissance Computing Institute (RENCI) Pronouns: she/her From: Weyhmiller, Aubrie Anne <aubriew@renci.org> Date: Thursday, April 16, 2026 at 17:49 To: Kayla Kilpatrick, Ph.D. <kayla.kilpatrick@duke.edu> Subject: Re: MDSC Lecture for MISM Internship Hi Kayla, Ditto, it was a great conversation! Thanks for sharing those documents. I’ll check in with the MDSC team and get back to you. Best, Aubrie Aubrie Weyhmiller Research Scientist Renaissance Computing Institute (RENCI) Pronouns: she/her From: Kayla Kilpatrick, Ph.D. <kayla.kilpatrick@duke.edu> Date: Thursday, April 16, 2026 at 13:55 To: Weyhmiller, Aubrie Anne <aubriew@renci.org> Subject: MDSC Lecture for MISM Internship Hi Aubrie, It was great chatting with you today! I've attached the project descriptions, along with the draft curriculum here. For the intro lecture/workshop during orientation week, here are some times that would work for scheduling if any of these work for you/the MDSC: -May 21: 10-11, 1-2 -May 22: 10-11, 11-12, 1-2 For a second talk, I think we might be able to squeeze something in July 1 or July 8 (maybe 11-12 or 1-2 those days). Let me know if there's anything else I can provide that would be helpful! Thanks! Kayla -- Kayla Kilpatrick, PhD (she/her) Biostatistician III BERD Methods Core Department of Biostatistics and Bioinformatics Duke University School of Medicine
Hi Aubrie, This sounds great. In addition, Ashok has mentioned another undergraduate intern that might work with MDSC. I connected with Gina-Maria and that intern can also be considered another MISM intern if helpful. I will be able to attend journal club tomorrow but I have meetings right before and after the journal club. I can connect over Zoom later in the day (3-5) tomorrow if helpful. Thank you, Nrupen From: Weyhmiller, Aubrie Anne <aubriew@renci.org> Date: Thursday, April 16, 2026 at 6:09 PM To: Peterson, Gabi via Mism-external <mism-external@lists.renci.org> Cc: Todd, Bryttany <btodd@renci.org>; Krishnamurthy, Ashok Kumar <ashok@renci.org>; Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu>; Jason Ji, Ph.D. <zhicheng.ji@duke.edu> Subject: FW: MDSC Lecture for MISM Internship Hi all, I had an excellent conversation with Kayla today, who is working on the MISM internship program. She explained the program is hosting 6 interns (graduate students, 5 PhD and 1 Masters) for 10 weeks from May 18 to ~July 24. Each RP will have 2 interns, and the research projects are outlined in the attached document. During the program, MISM will host various presentations/workshops (see the other attached doc). I think it would be great for MDSC to host an introduction to model and data sharing presentation during the first week (orientation). This could introduce the FAIR principles and existing resources such as the great model, data, code, and workflow guidelines<https://imageomics.github.io/Imageomics-guide/wiki-guide/FAIR-Guide/> from the Imageomics group we met at the FARR conference. There is room in the schedule for a later presentation in July. This could focus on more detailed FAIR components like ontologies, exchange formats like SBML, and Croissant for ML workflows. I’m happy to lead this effort. Ashok, we could also bring in other RENCI folks that are experts or at least consult with them. I know we have some folks who work with Croissant. Happy to talk more about this before/after journal club on Tuesday. I wanted to start a conversation here since we don’t have another meeting (aside from journal club) until April 27. If this sounds good to folks, I’d like to nail down a time slot for orientation week and start outlining a presentation before April 27. Best, Aubrie Aubrie Weyhmiller Research Scientist Renaissance Computing Institute (RENCI) Pronouns: she/her From: Weyhmiller, Aubrie Anne <aubriew@renci.org> Date: Thursday, April 16, 2026 at 17:49 To: Kayla Kilpatrick, Ph.D. <kayla.kilpatrick@duke.edu> Subject: Re: MDSC Lecture for MISM Internship Hi Kayla, Ditto, it was a great conversation! Thanks for sharing those documents. I’ll check in with the MDSC team and get back to you. Best, Aubrie Aubrie Weyhmiller Research Scientist Renaissance Computing Institute (RENCI) Pronouns: she/her From: Kayla Kilpatrick, Ph.D. <kayla.kilpatrick@duke.edu> Date: Thursday, April 16, 2026 at 13:55 To: Weyhmiller, Aubrie Anne <aubriew@renci.org> Subject: MDSC Lecture for MISM Internship Hi Aubrie, It was great chatting with you today! I've attached the project descriptions, along with the draft curriculum here. For the intro lecture/workshop during orientation week, here are some times that would work for scheduling if any of these work for you/the MDSC: -May 21: 10-11, 1-2 -May 22: 10-11, 11-12, 1-2 For a second talk, I think we might be able to squeeze something in July 1 or July 8 (maybe 11-12 or 1-2 those days). Let me know if there's anything else I can provide that would be helpful! Thanks! Kayla -- Kayla Kilpatrick, PhD (she/her) Biostatistician III BERD Methods Core Department of Biostatistics and Bioinformatics Duke University School of Medicine
Cool! Let’s decide during journal club if we want to hop on a zoom tomorrow afternoon or later this week. I’ll confirm with Jason and Ashok tomorrow as well, and then I will update Kayla . I think as long as I get confirmation by EOD tomorrow, I can draft up an outline to review with folks at our next call on Monday April 27. See you tomorrow, Aubrie Aubrie Weyhmiller Research Scientist Renaissance Computing Institute (RENCI) Pronouns: she/her From: Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu> Date: Monday, April 20, 2026 at 09:00 To: Weyhmiller, Aubrie Anne <aubriew@renci.org>, Peterson, Gabi via Mism-external <mism-external@lists.renci.org> Cc: Todd, Bryttany <btodd@renci.org>, Krishnamurthy, Ashok Kumar <ashok@renci.org>, Jason Ji, Ph.D. <zhicheng.ji@duke.edu> Subject: Re: MDSC Lecture for MISM Internship Hi Aubrie, This sounds great. In addition, Ashok has mentioned another undergraduate intern that might work with MDSC. I connected with Gina-Maria and that intern can also be considered another MISM intern if helpful. I will be able to attend journal club tomorrow but I have meetings right before and after the journal club. I can connect over Zoom later in the day (3-5) tomorrow if helpful. Thank you, Nrupen From: Weyhmiller, Aubrie Anne <aubriew@renci.org> Date: Thursday, April 16, 2026 at 6:09 PM To: Peterson, Gabi via Mism-external <mism-external@lists.renci.org> Cc: Todd, Bryttany <btodd@renci.org>; Krishnamurthy, Ashok Kumar <ashok@renci.org>; Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu>; Jason Ji, Ph.D. <zhicheng.ji@duke.edu> Subject: FW: MDSC Lecture for MISM Internship Hi all, I had an excellent conversation with Kayla today, who is working on the MISM internship program. She explained the program is hosting 6 interns (graduate students, 5 PhD and 1 Masters) for 10 weeks from May 18 to ~July 24. Each RP will have 2 interns, and the research projects are outlined in the attached document. During the program, MISM will host various presentations/workshops (see the other attached doc). I think it would be great for MDSC to host an introduction to model and data sharing presentation during the first week (orientation). This could introduce the FAIR principles and existing resources such as the great model, data, code, and workflow guidelines<https://imageomics.github.io/Imageomics-guide/wiki-guide/FAIR-Guide/> from the Imageomics group we met at the FARR conference. There is room in the schedule for a later presentation in July. This could focus on more detailed FAIR components like ontologies, exchange formats like SBML, and Croissant for ML workflows. I’m happy to lead this effort. Ashok, we could also bring in other RENCI folks that are experts or at least consult with them. I know we have some folks who work with Croissant. Happy to talk more about this before/after journal club on Tuesday. I wanted to start a conversation here since we don’t have another meeting (aside from journal club) until April 27. If this sounds good to folks, I’d like to nail down a time slot for orientation week and start outlining a presentation before April 27. Best, Aubrie Aubrie Weyhmiller Research Scientist Renaissance Computing Institute (RENCI) Pronouns: she/her From: Weyhmiller, Aubrie Anne <aubriew@renci.org> Date: Thursday, April 16, 2026 at 17:49 To: Kayla Kilpatrick, Ph.D. <kayla.kilpatrick@duke.edu> Subject: Re: MDSC Lecture for MISM Internship Hi Kayla, Ditto, it was a great conversation! Thanks for sharing those documents. I’ll check in with the MDSC team and get back to you. Best, Aubrie Aubrie Weyhmiller Research Scientist Renaissance Computing Institute (RENCI) Pronouns: she/her From: Kayla Kilpatrick, Ph.D. <kayla.kilpatrick@duke.edu> Date: Thursday, April 16, 2026 at 13:55 To: Weyhmiller, Aubrie Anne <aubriew@renci.org> Subject: MDSC Lecture for MISM Internship Hi Aubrie, It was great chatting with you today! I've attached the project descriptions, along with the draft curriculum here. For the intro lecture/workshop during orientation week, here are some times that would work for scheduling if any of these work for you/the MDSC: -May 21: 10-11, 1-2 -May 22: 10-11, 11-12, 1-2 For a second talk, I think we might be able to squeeze something in July 1 or July 8 (maybe 11-12 or 1-2 those days). Let me know if there's anything else I can provide that would be helpful! Thanks! Kayla -- Kayla Kilpatrick, PhD (she/her) Biostatistician III BERD Methods Core Department of Biostatistics and Bioinformatics Duke University School of Medicine
participants (2)
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Nrupen Bhavsar, Ph.D. -
Weyhmiller, Aubrie Anne