FW: [EXTERNAL] Re: Computational model repository
Hi MDSC folks, See this email chain for information about a connection Ashok and Nrupen recently made to Herbert Sauro, the Director of the NIH Center for Model Reproducibility<https://reproduciblebiomodels.org/>. Sounds like Ashok and Nrupen will meet with Herbet soon to discuss collaboration opportunities. I highly recommend checking out their website<https://reproduciblebiomodels.org/>, including their page on model and simulation annotation<https://reproduciblebiomodels.org/research/annotation/>. Best, Aubrie Aubrie Weyhmiller Research Scientist Renaissance Computing Institute (RENCI) Pronouns: she/her From: Krishnamurthy, Ashok Kumar <ashok@renci.org> Date: Wednesday, April 22, 2026 at 11:58 To: Weyhmiller, Aubrie Anne <aubriew@renci.org>, Gilani, Isma <igilani@renci.org>, Todd, Bryttany <btodd@renci.org> Subject: FW: [EXTERNAL] Re: Computational model repository Please forward to others on RENCI team. Ashok From: Krishnamurthy, Ashok Kumar <ashok@renci.org> Date: Wednesday, April 22, 2026 at 11:57 AM To: Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu>, penggr@mail.nih.gov <penggr@mail.nih.gov>, Herbert M Sauro <hsauro@uw.edu>, Hunter Robbins <robbinsh@uw.edu> Cc: NIAID Data Sharing <NIAID_datasharing@niaid.nih.gov> Subject: Re: [EXTERNAL] Re: Computational model repository Thank you for connecting us, Grace. Wonderful to meet you, Herbert and Hunter. I have filled out the scheduling grid. Look forward to our discussions. Ashok -- Ashok Krishnamurthy, PhD Director, RENCI<http://www.renci.org/> Professor, SDSS<https://sdss.unc.edu/> Research Professor, Computer Science<https://cs.unc.edu/> Co-Director, Informatics and Data Science, TraCS<https://tracs.unc.edu/> University of North Carolina, Chapel Hill<http://www.unc.edu/> From: Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu> Date: Wednesday, April 22, 2026 at 6:03 AM To: penggr@mail.nih.gov <penggr@mail.nih.gov>, Herbert M Sauro <hsauro@uw.edu>, Hunter Robbins <robbinsh@uw.edu> Cc: Krishnamurthy, Ashok Kumar <ashok@renci.org>, NIAID Data Sharing <NIAID_datasharing@niaid.nih.gov> Subject: Re: [EXTERNAL] Re: Computational model repository Thank you for connecting us, Grace. We look forward to learning more about the exciting work Herbert and his team are doing. Thank you, Nrupen From: Peng, Grace (NIH/NIBIB) [E] <penggr@mail.nih.gov> Date: Tuesday, April 21, 2026 at 11:29 AM To: Herbert M Sauro <hsauro@uw.edu>; Hunter Robbins <robbinsh@uw.edu> Cc: Krishnamurthy, Ashok Kumar <ashok@renci.org>; NIAID Data Sharing <NIAID_datasharing@niaid.nih.gov>; Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu> Subject: RE: [EXTERNAL] Re: Computational model repository Thanks Herbert! From: Herbert M Sauro <hsauro@uw.edu> Sent: Tuesday, April 21, 2026 11:08 AM To: Hunter Robbins <robbinsh@uw.edu>; Peng, Grace (NIH/NIBIB) [E] <penggr@mail.nih.gov> Cc: Ashok Krishnamurthy <ashok@renci.org>; NIAID Data Sharing <NIAID_datasharing@niaid.nih.gov>; Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu> Subject: [EXTERNAL] Re: Computational model repository I would be happy to set up a conversation. We’ve been working with models and model repositories for many years. We recently recurated the entire biomodels repositories so it’s probably the most reproducible database of models in any scientific domain. Hunter, could you help set up a zoom meeting with Ashok and Nrupen. Herbert Sauro Herbert Sauro, Professor Director: NIH Center for model reproducibility University of Washington, Bioengineering 206-685-2119, www.sys-bio.org<http://www.sys-bio.org/>, http://reproduciblebiomodels.org/ Mobile: 206-880-8093 hsauro@uw.edu<mailto:hsauro@uw.edu> Books: http://books.analogmachine.org/ On Tue, Apr 21, 2026 at 6:59 AM Peng, Grace (NIH/NIBIB) [E] <penggr@mail.nih.gov<mailto:penggr@mail.nih.gov>> wrote: Dear Ashok and Nrupen, It was a pleasure meeting you last week. I’m using this email to introduce you to Dr. Herbert Sauro, who is the contact PI for the NIBIB P41 Center for Reproducible Biomedical Modeling, https://reproduciblebiomodels.org/<https://urldefense.com/v3/__https:/reproduciblebiomodels.org/__;!!K-Hz7m0Vt54!kiq9FYuWCYTiSMDAYbiBtlR_NhgARuIBaGwTzSbiIXa_bOE7XRQN8dbiQPf19MDOxzimEPDwq_8WhovS$>. Hi Herbert, Ashok and Nrupen are the leaders of the Model and Data Core for the NIAID MISM Center, https://immunescale.org/<https://urldefense.com/v3/__https:/immunescale.org/__;!!K-Hz7m0Vt54!kiq9FYuWCYTiSMDAYbiBtlR_NhgARuIBaGwTzSbiIXa_bOE7XRQN8dbiQPf19MDOxzimEPDwq6LcHSHy$>. In their core, they are curating models to make them reproducible. I think they would benefit from learning about your center and the tools you are developing for the MSM Community. Best wishes, Grace From: Krishnamurthy, Ashok Kumar <ashok@renci.org<mailto:ashok@renci.org>> Sent: Wednesday, April 15, 2026 1:34 PM To: Peng, Grace (NIH/NIBIB) [E] <penggr@mail.nih.gov<mailto:penggr@mail.nih.gov>> Cc: Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu<mailto:nrupen.bhavsar@duke.edu>> Subject: [EXTERNAL] Computational model repository Dear Grace, It was a pleasure to talk to you!!! It feels like the work being done from NIBIB is very relevant to what we are doing in the Model and Data Sharing Core of MISM. Please connect us with the researchers and any other material you can provide to help us evaluate the fit to what we are doing. Thank you for bringing up this connection! With best regards, Ashok -- Ashok Krishnamurthy Director, RENCI<https://urldefense.com/v3/__http:/www.renci.org/__;!!K-Hz7m0Vt54!kiq9FYuWCYTiSMDAYbiBtlR_NhgARuIBaGwTzSbiIXa_bOE7XRQN8dbiQPf19MDOxzimEPDwq0dr96mM$> Professor, SDSS<https://urldefense.com/v3/__http:/sdss.unc.edu/__;!!K-Hz7m0Vt54!kiq9FYuWCYTiSMDAYbiBtlR_NhgARuIBaGwTzSbiIXa_bOE7XRQN8dbiQPf19MDOxzimEPDwqwsrGWbW$> Co-Director, NC TraCS<https://urldefense.com/v3/__https:/tracs.unc.edu/__;!!K-Hz7m0Vt54!kiq9FYuWCYTiSMDAYbiBtlR_NhgARuIBaGwTzSbiIXa_bOE7XRQN8dbiQPf19MDOxzimEPDwq2x2RvSu$> Informatics and Data Science University of North Carolina, Chapel Hill<https://urldefense.com/v3/__http:/www.unc.edu/__;!!K-Hz7m0Vt54!kiq9FYuWCYTiSMDAYbiBtlR_NhgARuIBaGwTzSbiIXa_bOE7XRQN8dbiQPf19MDOxzimEPDwq6wZSCEQ$> CAUTION: This email originated from outside of the organization. Do not click links or open attachments unless you recognize the sender and are confident the content is safe. CAUTION: This email originated from outside of the organization. Do not click links or open attachments unless you recognize the sender and are confident the content is safe.
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Weyhmiller, Aubrie Anne