Hi MDSC folks, 

See this email chain for information about a connection Ashok and Nrupen recently made to Herbert Sauro, the Director of the NIH Center for Model Reproducibility. Sounds like Ashok and Nrupen will meet with Herbet soon to discuss collaboration opportunities. 

I highly recommend checking out their website, including their page on model and simulation annotation

Best, 
Aubrie

Aubrie Weyhmiller
Research Scientist
Renaissance Computing Institute (RENCI)
Pronouns: she/her

 

From: Krishnamurthy, Ashok Kumar <ashok@renci.org>
Date: Wednesday, April 22, 2026 at 11:58
To: Weyhmiller, Aubrie Anne <aubriew@renci.org>, Gilani, Isma <igilani@renci.org>, Todd, Bryttany <btodd@renci.org>
Subject: FW: [EXTERNAL] Re: Computational model repository

Please forward to others on RENCI team.

Ashok

 

 

From: Krishnamurthy, Ashok Kumar <ashok@renci.org>
Date: Wednesday, April 22, 2026 at 11:57
AM
To: Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu>, penggr@mail.nih.gov <penggr@mail.nih.gov>, Herbert M Sauro <hsauro@uw.edu>, Hunter Robbins <robbinsh@uw.edu>
Cc: NIAID Data Sharing <NIAID_datasharing@niaid.nih.gov>
Subject: Re: [EXTERNAL] Re: Computational model repository

Thank you for connecting us, Grace.

 

Wonderful to meet you, Herbert and Hunter. I have filled out the scheduling grid.

 

Look forward to our discussions.

Ashok

 

-- 

Ashok Krishnamurthy, PhD

Director, RENCI

Professor, SDSS

Research Professor, Computer Science

Co-Director, Informatics and Data Science, TraCS

University of North Carolina, Chapel Hill

 

 

 

 

 

From: Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu>
Date: Wednesday, April 22, 2026 at 6:03
AM
To: penggr@mail.nih.gov <penggr@mail.nih.gov>, Herbert M Sauro <hsauro@uw.edu>, Hunter Robbins <robbinsh@uw.edu>
Cc: Krishnamurthy, Ashok Kumar <ashok@renci.org>, NIAID Data Sharing <NIAID_datasharing@niaid.nih.gov>
Subject: Re: [EXTERNAL] Re: Computational model repository

Thank you for connecting us, Grace. We look forward to learning more about the exciting work Herbert and his team are doing.

 

Thank you,

Nrupen 

 

From: Peng, Grace (NIH/NIBIB) [E] <penggr@mail.nih.gov>
Date: Tuesday, April 21, 2026 at 11:29
AM
To: Herbert M Sauro <hsauro@uw.edu>; Hunter Robbins <robbinsh@uw.edu>
Cc: Krishnamurthy, Ashok Kumar <ashok@renci.org>; NIAID Data Sharing <NIAID_datasharing@niaid.nih.gov>; Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu>
Subject: RE: [EXTERNAL] Re: Computational model repository

Thanks Herbert!

 

From: Herbert M Sauro <hsauro@uw.edu>
Sent: Tuesday, April 21, 2026 11:08 AM
To: Hunter Robbins <robbinsh@uw.edu>; Peng, Grace (NIH/NIBIB) [E] <penggr@mail.nih.gov>
Cc: Ashok Krishnamurthy <ashok@renci.org>; NIAID Data Sharing <NIAID_datasharing@niaid.nih.gov>; Nrupen Bhavsar, Ph.D. <nrupen.bhavsar@duke.edu>
Subject: [EXTERNAL] Re: Computational model repository

 

I would be happy to set up a conversation. We’ve been working with models and model repositories for many years.  We recently recurated the entire biomodels repositories so it’s probably the most reproducible database of models in any scientific domain.

 

Hunter, could you help set up a zoom meeting with Ashok and Nrupen.

 

Herbert Sauro

Herbert Sauro, Professor

Director: NIH Center for model reproducibility

University of Washington, Bioengineering

206-685-2119, www.sys-bio.org, http://reproduciblebiomodels.org/

Mobile: 206-880-8093

hsauro@uw.edu

Books: http://books.analogmachine.org/

 

 

On Tue, Apr 21, 2026 at 6:59AM Peng, Grace (NIH/NIBIB) [E] <penggr@mail.nih.gov> wrote:

Dear Ashok and Nrupen,

It was a pleasure meeting you last week.  I’m using this email to introduce you to Dr. Herbert Sauro, who is the contact PI for the NIBIB P41 Center for Reproducible Biomedical Modeling, https://reproduciblebiomodels.org/.

 

Hi Herbert,

Ashok and Nrupen are the leaders of the Model and Data Core for the NIAID MISM Center, https://immunescale.org/.  In their core, they are curating models to make them reproducible.  I think they would benefit from learning about your center and the tools you are developing for the MSM Community.

 

Best wishes,

Grace

 

From: Krishnamurthy, Ashok Kumar <ashok@renci.org>
Sent: Wednesday, April 15, 2026 1:34 PM
To: Peng, Grace (NIH/NIBIB) [E] <
penggr@mail.nih.gov>
Cc: Nrupen Bhavsar, Ph.D. <
nrupen.bhavsar@duke.edu>
Subject: [EXTERNAL] Computational model repository

 

Dear Grace,

It was a pleasure to talk to you!!!

 

It feels like the work being done from NIBIB is very relevant to what we are doing in the Model and Data Sharing Core of MISM. Please connect us with the researchers and any other material you can provide to help us evaluate the fit to what we are doing. Thank you for bringing up this connection!

 

With best regards,

Ashok

 

 

-- 

Ashok Krishnamurthy

Director, RENCI

Professor, SDSS

Co-Director, NC TraCS Informatics and Data Science

University of North Carolina, Chapel Hill

 

 

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