Hi all, Thanks for a great meeting today. Below are action items from our meeting. Use this link<https://docs.google.com/document/d/1NyKCUJl5n3-TOx4PxHGKIgRnFjURoJGTJcUFAleAdq8/edit?tab=t.0#bookmark=id.q8bvp61chqa9> for a complete meeting summary. Ashok * Draft intro paragraph for the manuscript by June 15th Aubrie * Reach out to Brittany to confirm the status of the new intern and obtain the intern's CV * Done, contingent offer out pending background check. Resume shared with Isma * Plan and organize the next journal club agenda, including a CAIRNS demo in two weeks * Develop a regular structure for technical updates and reporting * Circulate a clean version of the manuscript by end of day * Add time on Monday afternoon agenda to touch base on manuscript progress * Done * Document and create a system for showing progress to internal community and external community at regular intervals * Create a plan from now till December including regular reporting cadence for all working components Griffin * Work on getting Vivarium image up on the AI sandbox by end of the week Isma * Define concrete tasks for the new intern once assess resume From: Weyhmiller, Aubrie Anne via Mism-external <mism-external@lists.renci.org> Date: Monday, June 1, 2026 at 10:00 To: Weyhmiller, Aubrie Anne via Mism-external <mism-external@lists.renci.org> Subject: [Mism-external] Re: Tuesday 6/2 Virtual Journal Club Hi all, This is a reminder for our virtual journal club tomorrow at 11 AM. Please review the two papers below before our discussion. * The Viviarium paper (2022): Vivarium: an interface and engine for integrative<https://drive.google.com/file/d/1w-aiTsTr1VO7LdideV7u6CvFDgszM3qT/view?usp=drive_link> multiscale modeling in computational biology<https://drive.google.com/file/d/1w-aiTsTr1VO7LdideV7u6CvFDgszM3qT/view?usp=drive_link> * A multiscale model utilizing Vivarium (2020): A Multi-Scale Approach to Modeling E. coli Chemotaxis<https://drive.google.com/file/d/1Yx6AuiD3cjWvbeB9af1R14iQgC5gd3_O/view?usp=drive_link> Best, Aubrie From: Weyhmiller, Aubrie Anne <aubriew@renci.org> Date: Wednesday, May 27, 2026 at 17:28 To: Weyhmiller, Aubrie Anne via Mism-external <mism-external@lists.renci.org> Subject: Tuesday 6/2 Virtual Journal Club Hi all, I am looking forward to seeing you all at our next virtual journal club on Tuesday, June 2. We’ll take a few minutes at the beginning to catch up and report out on the MISM annual retreat. Then, we will discuss implementing Vivarium in the MDSC Platform. There are two relevant papers folks should review prior to our meeting: * The Viviarium paper (2022): Vivarium: an interface and engine for integrative<https://drive.google.com/file/d/1w-aiTsTr1VO7LdideV7u6CvFDgszM3qT/view?usp=drive_link> multiscale modeling in computational biology<https://drive.google.com/file/d/1w-aiTsTr1VO7LdideV7u6CvFDgszM3qT/view?usp=drive_link> * A multiscale model utilizing Vivarium (2020): A Multi-Scale Approach to Modeling E. coli Chemotaxis<https://drive.google.com/file/d/1Yx6AuiD3cjWvbeB9af1R14iQgC5gd3_O/view?usp=drive_link> Best, Aubrie Aubrie Weyhmiller Research Scientist Renaissance Computing Institute (RENCI) Pronouns: she/her